Segway 2.0 DocumentationΒΆ

Homepage:http://pmgenomics.ca/hoffmanlab/proj/segway
Author:Michael M. Hoffman <michael dot hoffman at utoronto dot ca>
Organization:Princess Margaret Cancer Centre
Address:Toronto Medical Discovery Tower 11-311, 101 College St, M5G 1L7, Toronto, Ontario, Canada
Copyright:2009-2015 Michael M. Hoffman
Last updated:Aug 01, 2017

For a conceptual overview see the paper:

Michael M. Hoffman, Orion J. Buske, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble. 2012. Unsupervised pattern discovery in human chromatin structure through genomic segmentation. Nat Methods 9:473-476. doi:10.1038/nmeth.1937.

Manuscript version available at PubMed Central requires no subscription.

For a preprint of a protocol on using Segway see:

Roberts EG, Mendez M, Viner C, Karimzadeh M, Chan RCW, Ancar R, Chicco D, Hesselberth JR, Kundaje A, Hoffman MM. 2016. Semi-automated genome annotation using epigenomic data and Segway. Preprint: http://doi.org/10.1101/080382